Registry EchoBASE post-genomic database for Escherichia coli

EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.

Prefix
echobase
Keywords
gene gene expression
Links
Homepage
Contact
Gavin H. Thomas   0000-0002-9763-1313   ghthomas
Pattern for Local Unique Identifiers

Local identifiers in EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^EB\d+$

Example Local Unique Identifier
EB0170   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from EchoBASE post-genomic database for Escherichia coli should match this regular expression:
^echobase:EB\d+$

Example CURIE
echobase:EB0170
Publications
2005 EchoBASE: an integrated post-genomic database for Escherichia coli
Metaregistry EchoBASE post-genomic database for Escherichia coli

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ECHOBASE
GO Gene Ontology Registry logo go EchoBASE
Identifiers.org Identifiers.org logo miriam echobase
N2T Name-to-Thing logo n2t echobase
Prefix Commons Prefix Commons logo prefixcommons echobase
re3data Registry of Research Data Repositories logo re3data r3d100011646
UniProt UniProt Cross-ref database logo uniprot DB-0020
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier EB0170 is used to demonstrate the providers available for EchoBASE post-genomic database for Escherichia coli. A guide for curating additional providers can be found here.

Name Metaprefix URI
EchoBASE post-genomic database for Escherichia coli echobase http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0170
Bioregistry bioregistry https://bioregistry.io/echobase:EB0170
Identifiers.org miriam https://identifiers.org/echobase:EB0170
Name-to-Thing n2t https://n2t.net/echobase:EB0170
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/echobase:EB0170