EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways.

Prefix
ecocyc
Keywords
biology
Links
Homepage
Contact
Peter Karp   0000-0002-5876-6418   pkarp111
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
AICARTRANSIMPCYCLO-CPLX   Resolve
Example CURIE
ecocyc:AICARTRANSIMPCYCLO-CPLX
Publications
Contributors
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Global Biodata Coalition - Global Core Biodata Resources
Metaregistry EcoCyc

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.65dmtr
GO Gene Ontology Registry logo go EcoCyc
Integbio Integbio logo integbio nbdc00262
NCBI National Center for Biotechnology Information Registry logo ncbi ECOCYC
Pathguide Pathguide logo pathguide 9
re3data Registry of Research Data Repositories logo re3data r3d100011277
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier AICARTRANSIMPCYCLO-CPLX is used to demonstrate the providers available for EcoCyc. A guide for curating additional providers can be found here.

Name Metaprefix URI
EcoCyc ecocyc https://ecocyc.org/gene?id=AICARTRANSIMPCYCLO-CPLX
Bioregistry bioregistry https://bioregistry.io/ecocyc:AICARTRANSIMPCYCLO-CPLX