The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.

Prefix
geo
Keywords
comparative genomics epigenomics gene expression genome genomics life science omics phenomics transcriptomics
Links
Homepage
Contact
Tanya Barrett   0000-0002-9448-8064
Pattern for Local Unique Identifiers

Local identifiers in NCBI Gene Expression Omnibus should match this regular expression:
^G(PL|SM|SE|DS)\d+$

Example Local Unique Identifier
GDS1234   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from NCBI Gene Expression Omnibus should match this regular expression:
^geo:G(PL|SM|SE|DS)\d+$

Example CURIE
geo:GDS1234
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Resources mentioned in "Sharing biological data: why, when, and how"
Metaregistry NCBI Gene Expression Omnibus

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Cellosaurus Cellosaurus Registry logo cellosaurus GEO
EDAM EDAM Ontology logo edam 1147
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.5hc8vt
GO Gene Ontology Registry logo go GEO
Integbio Integbio logo integbio nbdc00080
Identifiers.org Identifiers.org logo miriam geo
N2T Name-to-Thing logo n2t geo
Prefix Commons Prefix Commons logo prefixcommons geo
re3data Registry of Research Data Repositories logo re3data r3d100010283
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier GDS1234 is used to demonstrate the providers available for NCBI Gene Expression Omnibus. A guide for curating additional providers can be found here.

Name Metaprefix URI
NCBI Gene Expression Omnibus geo https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GDS1234
Bioregistry bioregistry https://bioregistry.io/geo:GDS1234
Identifiers.org miriam https://identifiers.org/geo:GDS1234
Name-to-Thing n2t https://n2t.net/geo:GDS1234
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/geo:GDS1234