An ontology for glycans based on GlyTouCan, but organized by subsumption.

Prefix
gno
Preferred Prefix
GNO
Alternative Prefixes
gnome
Keywords
obo ontology
Version
2024-05-21
License
CC-BY-4.0
Links
Homepage Repository OBO OWL OBO JSON
Contact
Nathan Edwards   0000-0001-5168-3196   edwardsnj
Pattern for Local Unique Identifiers

Local identifiers in Glycan Naming and Subsumption Ontology should match this regular expression:
^(\d{8}|(\w+\d+\w+))$

Example Local Unique Identifiers
10004892   Resolve
G99373GG   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Glycan Naming and Subsumption Ontology should match this regular expression:
^GNO:(\d{8}|(\w+\d+\w+))$

Example CURIEs
GNO:10004892
GNO:G99373GG
Publications
2021 GNOme - Glycan Naming and Subsumption Ontology
Metaregistry Glycan Naming and Subsumption Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl GNO
BioPortal BioPortal Prefixes logo bioportal GNO
OBO Foundry OBO Foundry logo obofoundry gno
OLS Ontology Lookup Service logo ols gno
OntoBee OntoBee logo ontobee GNO
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/GNO_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 10004892 is used to demonstrate the providers available for Glycan Naming and Subsumption Ontology. A guide for curating additional providers can be found here.

Name Metaprefix URI
Glycan Naming and Subsumption Ontology gno http://purl.obolibrary.org/obo/GNO_10004892
Glycan Naming and Subsumption Ontology (RDF) rdf http://purl.obolibrary.org/obo/GNO_10004892
Bioregistry bioregistry https://bioregistry.io/gno:10004892
OBO Foundry obofoundry http://purl.obolibrary.org/obo/GNO_10004892
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_10004892
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/GNO/?p=classes&conceptid=http://purl.obolibrary.org/obo/GNO_10004892
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
gno.composition GNOme Composition Browser https://gnome.glyomics.org/CompositionBrowser.html?focus=10004892
gno.structure GNOme Structure Viewer https://gnome.glyomics.org/StructureBrowser.html?focus=10004892