Registry Database of Complete Genome Homologous Genes Families

HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.

Prefix
hogenom
Keywords
classification life science phylogenetics phylogeny sequence
Links
Homepage
Contact
Guy Perrière   0000-0002-6850-6265
Pattern for Local Unique Identifiers

Local identifiers in Database of Complete Genome Homologous Genes Families should match this regular expression:
^\w+$

Example Local Unique Identifier
HBG284870   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Database of Complete Genome Homologous Genes Families should match this regular expression:
^hogenom:\w+$

Example CURIE
hogenom:HBG284870
Publications
Metaregistry Database of Complete Genome Homologous Genes Families

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext HOGENOM
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.qe8tz8
Integbio Integbio logo integbio nbdc01858
Identifiers.org Identifiers.org logo miriam hogenom
N2T Name-to-Thing logo n2t hogenom
Prefix Commons Prefix Commons logo prefixcommons hogenom
UniProt UniProt Cross-ref database logo uniprot DB-0044
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier HBG284870 is used to demonstrate the providers available for Database of Complete Genome Homologous Genes Families. A guide for curating additional providers can be found here.

Name Metaprefix URI
Database of Complete Genome Homologous Genes Families hogenom http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=HBG284870
Bioregistry bioregistry https://bioregistry.io/hogenom:HBG284870
Identifiers.org miriam https://identifiers.org/hogenom:HBG284870
Name-to-Thing n2t https://n2t.net/hogenom:HBG284870
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/hogenom:HBG284870