The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.

Prefix
homd.taxon
Keywords
microbial taxonomy
Links
Homepage
Contact
Tsute Chen   0000-0001-6689-317X   tsute
Pattern for Local Unique Identifiers

Local identifiers in Human Oral Microbiome Database should match this regular expression:
^\d+$

Example Local Unique Identifier
811   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Human Oral Microbiome Database should match this regular expression:
^homd\.taxon:\d+$

Example CURIE
homd.taxon:811
Publications
2010 The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information
Metaregistry Human Oral Microbiome Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext HOMD.TAXON
Identifiers.org Identifiers.org logo miriam homd.taxon
N2T Name-to-Thing logo n2t homd.taxon
NCBI National Center for Biotechnology Information Registry logo ncbi HOMD
Prefix Commons Prefix Commons logo prefixcommons homd.taxon
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 811 is used to demonstrate the providers available for Human Oral Microbiome Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Human Oral Microbiome Database homd.taxon http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=811
Bioregistry bioregistry https://bioregistry.io/homd.taxon:811
Identifiers.org miriam https://identifiers.org/homd.taxon:811
Name-to-Thing n2t https://n2t.net/homd.taxon:811
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/homd.taxon:811