MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides

Prefix
matrixdb
Keywords
biology interaction protein small molecule
Links
Homepage
Contact
Sylvie Ricard-Blum   0000-0001-9263-1851   ricardblum
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
MULT_4_VAR1_bovine   Resolve
Example CURIE
matrixdb:MULT_4_VAR1_bovine
Publications
Contributors
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Appears In (1) (bioregistry.schema:0000018 )
complexportal
Metaregistry MatrixDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.91yrz6
Integbio Integbio logo integbio nbdc01222
Pathguide Pathguide logo pathguide 298
Prefix Commons Prefix Commons logo prefixcommons matrixdb
re3data Registry of Research Data Repositories logo re3data r3d100010672
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MULT_4_VAR1_bovine is used to demonstrate the providers available for MatrixDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
MatrixDB matrixdb http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=MULT_4_VAR1_bovine
Bioregistry bioregistry https://bioregistry.io/matrixdb:MULT_4_VAR1_bovine
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/matrixdb:MULT_4_VAR1_bovine