ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.

Prefix
modeldb
Keywords
computational biology life science neurobiology
Links
Homepage
Contact
Perry Miller   0000-0002-5176-943X
Pattern for Local Unique Identifiers

Local identifiers in ModelDB should match this regular expression:
^\d+$

Example Local Unique Identifier
45539   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ModelDB should match this regular expression:
^modeldb:\d+$

Example CURIE
modeldb:45539
Publications
Metaregistry ModelDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MODELDB
EDAM EDAM Ontology logo edam 2669
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.5rb3fk
Integbio Integbio logo integbio nbdc02085
Identifiers.org Identifiers.org logo miriam modeldb
N2T Name-to-Thing logo n2t modeldb
Prefix Commons Prefix Commons logo prefixcommons modeldb
re3data Registry of Research Data Repositories logo re3data r3d100011330
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 45539 is used to demonstrate the providers available for ModelDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
ModelDB modeldb https://modeldb.science/45539
Bioregistry bioregistry https://bioregistry.io/modeldb:45539
Identifiers.org miriam https://identifiers.org/modeldb:45539
Name-to-Thing n2t https://n2t.net/modeldb:45539
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/modeldb:45539