NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.

Prefix
noncodev3
Keywords
expression nucleotide
Links
Homepage
Contact
Yi Zhao   0000-0001-6049-8347
Pattern for Local Unique Identifiers

Local identifiers in NONCODE v3 should match this regular expression:
^\d+$

Example Local Unique Identifier
377550   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from NONCODE v3 should match this regular expression:
^noncodev3:\d+$

Example CURIE
noncodev3:377550
Publications
2011 NONCODE v3.0: integrative annotation of long noncoding RNAs
Metaregistry NONCODE v3

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext NONCODEV3
Identifiers.org Identifiers.org logo miriam noncodev3
N2T Name-to-Thing logo n2t noncodev3
Prefix Commons Prefix Commons logo prefixcommons noncode
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 377550 is used to demonstrate the providers available for NONCODE v3. A guide for curating additional providers can be found here.

Name Metaprefix URI
NONCODE v3 noncodev3 http://www.noncode.org/NONCODERv3/ncrna.php?ncid=377550
Bioregistry bioregistry https://bioregistry.io/noncodev3:377550
Identifiers.org miriam https://identifiers.org/noncodev3:377550
Name-to-Thing n2t https://n2t.net/noncodev3:377550
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/noncode:377550