Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.

Prefix
pathwaycommons
Keywords
pathway
Links
Homepage
Contact
Chris Sander   0000-0001-6059-6270   sanderlab
Pattern for Local Unique Identifiers

Local identifiers in Pathway Commons should match this regular expression:
^\d+$

Example Local Unique Identifier
485991   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Pathway Commons should match this regular expression:
^pathwaycommons:\d+$

Example CURIE
pathwaycommons:485991
Publications
Metaregistry Pathway Commons

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PATHWAYCOMMONS
Identifiers.org Identifiers.org logo miriam pathwaycommons
N2T Name-to-Thing logo n2t pathwaycommons
Prefix Commons Prefix Commons logo prefixcommons pathwaycommons
re3data Registry of Research Data Repositories logo re3data r3d100012731
UniProt UniProt Cross-ref database logo uniprot DB-0253
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 485991 is used to demonstrate the providers available for Pathway Commons. A guide for curating additional providers can be found here.

Name Metaprefix URI
Pathway Commons pathwaycommons http://www.pathwaycommons.org/pc/record2.do?id=485991
Bioregistry bioregistry https://bioregistry.io/pathwaycommons:485991
Identifiers.org miriam https://identifiers.org/pathwaycommons:485991
Name-to-Thing n2t https://n2t.net/pathwaycommons:485991
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/pathwaycommons:485991