The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. PharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies.

Prefix
pharmgkb.pathways
Keywords
pathway pharmacogenomics
Links
Homepage
Contact
Teri E Klein   0000-0001-5527-6475   TeriKlein
Pattern for Local Unique Identifiers

Local identifiers in PharmGKB should match this regular expression:
^PA\d+$

Example Local Unique Identifier
PA146123006   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PharmGKB should match this regular expression:
^pharmgkb\.pathways:PA\d+$

Example CURIE
pharmgkb.pathways:PA146123006
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Global Biodata Coalition - Global Core Biodata Resources
Metaregistry PharmGKB

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PHARMGKB.PATHWAYS
Biolink Biolink Model Registry logo biolink PHARMGKB.PATHWAYS
EDAM EDAM Ontology logo edam 2650
Identifiers.org Identifiers.org logo miriam pharmgkb.pathways
N2T Name-to-Thing logo n2t pharmgkb.pathways
Prefix Commons Prefix Commons logo prefixcommons pharmgkb.pathways
Wikidata Wikidata Property logo wikidata P7001
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PA146123006 is used to demonstrate the providers available for PharmGKB. A guide for curating additional providers can be found here.

Name Metaprefix URI
PharmGKB pharmgkb.pathways http://www.pharmgkb.org/pathway/PA146123006
Bioregistry bioregistry https://bioregistry.io/pharmgkb.pathways:PA146123006
Identifiers.org miriam https://identifiers.org/pharmgkb.pathways:PA146123006
Name-to-Thing n2t https://n2t.net/pharmgkb.pathways:PA146123006
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/pharmgkb.pathways:PA146123006