The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.

Prefix
planttfdb
Keywords
dna gene life science protein regulation rna small molecule
Links
Homepage
Contact
Ge Gao   0000-0001-6470-8815   gao-ge
Pattern for Local Unique Identifiers

Local identifiers in Plant Transcription Factor Database should match this regular expression:
^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$

Example Local Unique Identifier
Ath_AT1G01030.1   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Plant Transcription Factor Database should match this regular expression:
^planttfdb:[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\._\-#]*)$

Example CURIE
planttfdb:Ath_AT1G01030.1
Publications
Metaregistry Plant Transcription Factor Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PLANTTFDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.ex3fqk
Identifiers.org Identifiers.org logo miriam planttfdb
N2T Name-to-Thing logo n2t planttfdb
Pathguide Pathguide logo pathguide 497
Prefix Commons Prefix Commons logo prefixcommons planttfdb
re3data Registry of Research Data Repositories logo re3data r3d100011301
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier Ath_AT1G01030.1 is used to demonstrate the providers available for Plant Transcription Factor Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Plant Transcription Factor Database planttfdb http://planttfdb.cbi.pku.edu.cn/tf.php?uid=Ath_AT1G01030.1
Bioregistry bioregistry https://bioregistry.io/planttfdb:Ath_AT1G01030.1
Identifiers.org miriam https://identifiers.org/planttfdb:Ath_AT1G01030.1
Name-to-Thing n2t https://n2t.net/planttfdb:Ath_AT1G01030.1
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/planttfdb:Ath_AT1G01030.1