AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

Prefix
plasmodb
Alternative Prefixes
ApiDB_PlasmoDB
Keywords
genome genomics infectious disease medicine
Links
Homepage
Contact
Omar S. Harb   0000-0003-4446-6200   ramobrah
Pattern for Local Unique Identifiers

Local identifiers in PlasmoDB should match this regular expression:
^\w+$

Example Local Unique Identifier
PF11_0344   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PlasmoDB should match this regular expression:
^plasmodb:\w+$

Example CURIE
plasmodb:PF11_0344
Publications
2008 PlasmoDB: a functional genomic database for malaria parasites
Metaregistry PlasmoDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 6 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PLASMODB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.g4n8sw
GO Gene Ontology Registry logo go PlasmoDB
Integbio Integbio logo integbio nbdc01783
Identifiers.org Identifiers.org logo miriam plasmodb
N2T Name-to-Thing logo n2t plasmodb
NCBI National Center for Biotechnology Information Registry logo ncbi ApiDB_PlasmoDB
Pathguide Pathguide logo pathguide 514
Prefix Commons Prefix Commons logo prefixcommons plasmodb
re3data Registry of Research Data Repositories logo re3data r3d100011569
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PF11_0344 is used to demonstrate the providers available for PlasmoDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
PlasmoDB plasmodb http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=PF11_0344
Bioregistry bioregistry https://bioregistry.io/plasmodb:PF11_0344
Identifiers.org miriam https://identifiers.org/plasmodb:PF11_0344
Name-to-Thing n2t https://n2t.net/plasmodb:PF11_0344
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/plasmodb:PF11_0344