PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.

Prefix
pombase
Alternative Prefixes
PomBase
Keywords
life science
Links
Homepage
Contact
Valerie Wood   0000-0001-6330-7526   ValWood
Pattern for Local Unique Identifiers

Local identifiers in PomBase should match this regular expression:
^S\w+(\.)?\w+(\.)?$

Example Local Unique Identifier
SPCC13B11.01   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from PomBase should match this regular expression:
^pombase:S\w+(\.)?\w+(\.)?$

Example CURIE
pombase:SPCC13B11.01
Publications
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
Global Biodata Coalition - Global Core Biodata Resources
Metaregistry PomBase

The metaregistry provides mappings between the Bioregistry and other registries. There are 12 mappings to external registries for this resource with 6 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PomBase
Biolink Biolink Model Registry logo biolink PomBase
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.8jsya3
GO Gene Ontology Registry logo go PomBase
Integbio Integbio logo integbio nbdc00332
Identifiers.org Identifiers.org logo miriam pombase
N2T Name-to-Thing logo n2t pombase
NCBI National Center for Biotechnology Information Registry logo ncbi PomBase
Prefix Commons Prefix Commons logo prefixcommons pombase
re3data Registry of Research Data Repositories logo re3data r3d100011478
UniProt UniProt Cross-ref database logo uniprot DB-0031
Wikidata Wikidata Property logo wikidata P6245
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SPCC13B11.01 is used to demonstrate the providers available for PomBase. A guide for curating additional providers can be found here.

Name Metaprefix URI
PomBase pombase https://www.pombase.org/gene/SPCC13B11.01
Bioregistry bioregistry https://bioregistry.io/pombase:SPCC13B11.01
Identifiers.org miriam https://identifiers.org/pombase:SPCC13B11.01
Name-to-Thing n2t https://n2t.net/pombase:SPCC13B11.01
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/pombase:SPCC13B11.01