ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.

Prefix
protclustdb
Keywords
genetics genomics life science protein structure
Links
Homepage
Contact
William Klimke
Pattern for Local Unique Identifiers

Local identifiers in ProtClustDB should match this regular expression:
^\w+$

Example Local Unique Identifier
O80725   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ProtClustDB should match this regular expression:
^protclustdb:\w+$

Example CURIE
protclustdb:O80725
Publications
2008 The National Center for Biotechnology Information's Protein Clusters Database
Metaregistry ProtClustDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PROTCLUSTDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.da493y
Identifiers.org Identifiers.org logo miriam protclustdb
N2T Name-to-Thing logo n2t protclustdb
Prefix Commons Prefix Commons logo prefixcommons protclustdb
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier O80725 is used to demonstrate the providers available for ProtClustDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
ProtClustDB protclustdb https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=O80725
Bioregistry bioregistry https://bioregistry.io/protclustdb:O80725
Identifiers.org miriam https://identifiers.org/protclustdb:O80725
Name-to-Thing n2t https://n2t.net/protclustdb:O80725
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/protclustdb:O80725