ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information.

Prefix
protonet.cluster
Keywords
classification clustering protein
Links
Homepage
Contact
Michal Linial   0000-0002-9357-4526   LinialLab
Pattern for Local Unique Identifiers

Local identifiers in ProtoNet Cluster should match this regular expression:
^\d+$

Example Local Unique Identifier
4349895   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from ProtoNet Cluster should match this regular expression:
^protonet\.cluster:\d+$

Example CURIE
protonet.cluster:4349895
Publications
2006 Functional annotation prediction: all for one and one for all
Metaregistry ProtoNet Cluster

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PROTONET.CLUSTER
Identifiers.org Identifiers.org logo miriam protonet.cluster
N2T Name-to-Thing logo n2t protonet.cluster
Prefix Commons Prefix Commons logo prefixcommons protonet.cluster
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 4349895 is used to demonstrate the providers available for ProtoNet Cluster. A guide for curating additional providers can be found here.

Name Metaprefix URI
ProtoNet Cluster protonet.cluster http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=4349895
Bioregistry bioregistry https://bioregistry.io/protonet.cluster:4349895
Identifiers.org miriam https://identifiers.org/protonet.cluster:4349895
Name-to-Thing n2t https://n2t.net/protonet.cluster:4349895
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/protonet.cluster:4349895