Registry NCBI PubChem database of bioassay records

PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results.

Prefix
pubchem.bioassay
Alternative Prefixes
pubchem.aid pubchem.assay
Keywords
small molecule
Links
Homepage
Contact
Kim Dixon Pruitt   0000-0001-7950-1374
Pattern for Local Unique Identifiers

Local identifiers in NCBI PubChem database of bioassay records should match this regular expression:
^\d+$

Example Local Unique Identifier
1018   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from NCBI PubChem database of bioassay records should match this regular expression:
^pubchem\.bioassay:\d+$

Example CURIE
pubchem.bioassay:1018
Publications
2006 Database resources of the National Center for Biotechnology Information
Ontology

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 )
pubchem
Metaregistry NCBI PubChem database of bioassay records

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext PUBCHEM.BIOASSAY
EDAM EDAM Ontology logo edam 2638
GO Gene Ontology Registry logo go PubChem_BioAssay
Integbio Integbio logo integbio nbdc00640
Identifiers.org Identifiers.org logo miriam pubchem.bioassay
N2T Name-to-Thing logo n2t pubchem.bioassay
Prefix Commons Prefix Commons logo prefixcommons pubchem.bioassay
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 1018 is used to demonstrate the providers available for NCBI PubChem database of bioassay records. A guide for curating additional providers can be found here.

Name Metaprefix URI
NCBI PubChem database of bioassay records pubchem.bioassay https://pubchem.ncbi.nlm.nih.gov/bioassay/1018
Bioregistry bioregistry https://bioregistry.io/pubchem.bioassay:1018
Identifiers.org miriam https://identifiers.org/pubchem.bioassay:1018
Name-to-Thing n2t https://n2t.net/pubchem.bioassay:1018
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/pubchem.bioassay:1018