The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.

Prefix
smpdb
Alternative Prefixes
SMP
Keywords
chemical human life science metabolite pathway
Links
Homepage
Contact
David S. Wishart   0000-0002-3207-2434   DavidWishartLab
Pattern for Local Unique Identifiers

Local identifiers in Small Molecule Pathway Database should match this regular expression:
^SMP\d+$

Example Local Unique Identifier
SMP0000219   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Small Molecule Pathway Database should match this regular expression:
^smpdb:SMP\d+$

Example CURIE
smpdb:SMP0000219
Publications
Metaregistry Small Molecule Pathway Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for this resource with 6 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext SMPDB
Biolink Biolink Model Registry logo biolink PathWhiz
EDAM EDAM Ontology logo edam 2659
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.y1zyaq
Integbio Integbio logo integbio nbdc00908
Identifiers.org Identifiers.org logo miriam smpdb
N2T Name-to-Thing logo n2t smpdb
Pathguide Pathguide logo pathguide 311
Prefix Commons Prefix Commons logo prefixcommons smpdb
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SMP0000219 is used to demonstrate the providers available for Small Molecule Pathway Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Small Molecule Pathway Database smpdb https://smpdb.ca/view/SMP0000219
Bioregistry bioregistry https://bioregistry.io/smpdb:SMP0000219
Identifiers.org miriam https://identifiers.org/smpdb:SMP0000219
Name-to-Thing n2t https://n2t.net/smpdb:SMP0000219
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/smpdb:SMP0000219