Registry Classification of Transcription Factors in Mammalia

TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here..

Prefix
tfclass
Keywords
binding binding site bioinformatics expression data phylogenetics transcription factor transcription factor binding site prediction transcriptomics
Links
Homepage
Contact
Edgar Wingender   0000-0002-7729-8453
Pattern for Local Unique Identifiers
Missing LUI pattern
Example Local Unique Identifier
2.1.1   Resolve
Example CURIE
tfclass:2.1.1
Publications
2018 TFClass: expanding the classification of human transcription factors to their mammalian orthologs
Contributors
Metaregistry Classification of Transcription Factors in Mammalia

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.XykycZ
GO Gene Ontology Registry logo go TFClass
Pathguide Pathguide logo pathguide 666
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 2.1.1 is used to demonstrate the providers available for Classification of Transcription Factors in Mammalia. A guide for curating additional providers can be found here.

Name Metaprefix URI
Classification of Transcription Factors in Mammalia tfclass http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=2.1.1
Bioregistry bioregistry https://bioregistry.io/tfclass:2.1.1