Registry Unimod protein modification database for mass spectrometry

Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).

Prefix
unimod
Keywords
bioinformatics ontology
Links
Homepage OWL
Contact
John Cottrell   0000-0003-3843-0818
Pattern for Local Unique Identifiers

Local identifiers in Unimod protein modification database for mass spectrometry should match this regular expression:
^\d+$

Example Local Unique Identifier
1200   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Unimod protein modification database for mass spectrometry should match this regular expression:
^unimod:\d+$

Example CURIE
unimod:1200
Publications
2004 Unimod: Protein modifications for mass spectrometry
Metaregistry Unimod protein modification database for mass spectrometry

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext UNIMOD
EDAM EDAM Ontology logo edam 3757
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.zZHCUQ
Identifiers.org Identifiers.org logo miriam unimod
N2T Name-to-Thing logo n2t unimod
OLS Ontology Lookup Service logo ols unimod
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 1200 is used to demonstrate the providers available for Unimod protein modification database for mass spectrometry. A guide for curating additional providers can be found here.

Name Metaprefix URI
Unimod protein modification database for mass spectrometry unimod http://www.unimod.org/modifications_view.php?editid1=1200
Bioregistry bioregistry https://bioregistry.io/unimod:1200
Identifiers.org miriam https://identifiers.org/unimod:1200
Name-to-Thing n2t https://n2t.net/unimod:1200