The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).

Prefix
ymdb
Keywords
life science metabolomics
Links
Homepage
Contact
David S. Wishart   0000-0002-3207-2434   DavidWishartLab
Pattern for Local Unique Identifiers

Local identifiers in Yeast Metabolome Database should match this regular expression:
^YMDB\d+$

Example Local Unique Identifier
YMDB00001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Yeast Metabolome Database should match this regular expression:
^ymdb:YMDB\d+$

Example CURIE
ymdb:YMDB00001
Publications
2011 YMDB: the Yeast Metabolome Database
Contributors
Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection
ChEBI Data Sources
Metaregistry Yeast Metabolome Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.tawpg2
Pathguide Pathguide logo pathguide 388
re3data Registry of Research Data Repositories logo re3data r3d100012733
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier YMDB00001 is used to demonstrate the providers available for Yeast Metabolome Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
Yeast Metabolome Database ymdb http://www.ymdb.ca/compounds/YMDB00001
Bioregistry bioregistry https://bioregistry.io/ymdb:YMDB00001